Posts by Collection

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Subset selection of high-depth next generation sequencing reads for de novos genome assembly using mapreduce framework.

Published in BMC Genomics, 2015

This paper is about using Mapreduce Framework to select high-quality NGS reads for the De novo whole-genome sequence assembly.

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Opening up the blackbox: an interpretable deep neural network-based classifier for cell-type specific enhancer predictions

Published in BMC System Biology, 2016

This paper is about designing an interpretable deep neural network for enhancer prediction task.

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Aikyatan: mapping distal regulatory elements using convolutional learning on gpu.

Published in BMC Bioinformatics, 2019

This paper is about designing the convolutional neural network to utilize the shift-invariant property of the histone modification signals to increase the regulatory elements prediction rate.

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Newton-ADMM: A Distributed GPU-Accelerated Optimizer for Multiclass Classification Problems.

Published in Proceedings of the ACM/IEEE Supercomputing Conference, 2020

Distributed Second Order Optimizer for Multiclass Classification Problems.

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Identifying and analyzing sepsis states: A retrospective study on patients with sepsis in ICUs

Published in Plos Digital Health, 2022

Identifying and analyzing sepsis states: A retrospective study on patients with sepsis in ICUs

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Interpretable and Fast Models for Personalized Genomics, NVIDIA and IBM HPC and Life Sciences Workshop

Published: March 01, 2017

Estimating Treatment Strategies using Reinforcement Learning.

Published: January 15, 2020

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Newton-ADMM: A Distributed GPU-Accelerated Optimizer for Multiclass Classification Problems

Published: November 18, 2020

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Identifying and Analyzing Sepsis States: A Retrospective Study on Patients with Sepsis in ICUs.

Published: February 24, 2021

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Teaching experience 1

Undergraduate course, University 1, Department, 2014

This is a description of a teaching experience. You can use markdown like any other post.

Teaching experience 2

Workshop, University 1, Department, 2015

This is a description of a teaching experience. You can use markdown like any other post.